How to draw a graph image?

A simple way to do it is to use prebuilt libraries using algorithms like the Kamada-Kawai and Fructerman-Reingold layout algorithms

Sample implementation:

From igraph import *

g = Graph()

vertex_labels=[‘A’, ‘B’, ‘C’, ‘D’, ‘E’]

attributes={}

attributes[“label”] = vertex_labels

g.add_vertices(5, **attributes).add_edges([(0, 1),

(1, 2),

(2, 3),

(3, 4),

(4, 0),

(2, 4),

(0, 3),

(4, 1)]

layout = g.layout(“kamada_kawai”)

plot(g, layout=layout)

If we control spacing ourselves to spread the edges with little or no crossing lines, we could anneal the costs of overlapping.

# The following program lays out a graph with little or no crossing lines.

from PIL import Image, ImageDraw

import math

import random

 

vertex = ['A','B','C','D','E']

links=[('A', 'B'),

('B', 'C'),

('C', 'D'),

('D', 'E'),

('E', 'A'),

('C', 'E'),

('A', 'D'),

('E', 'B')]

domain=[(10,370)]*(len(vertex)*2)

 

def randomoptimize(domain,costf):

    best=999999999

    bestr=None

    for i in range(1000):

        # Create a random solution

        r=[random.randint(domain[i][0],domain[i][1]) for i in range(len(domain))]

        # Get the cost

        cost=costf(r)

        # Compare it to the best one so far

        if cost<best:

            best=cost

            bestr=r

    return r

 

def annealingoptimize(domain,costf,T=10000.0,cool=0.95,step=1):

    # Initialize the values randomly

    vec=[float(random.randint(domain[i][0],domain[i][1]))

         for i in range(len(domain))]

 

    while T>0.1:

        # Choose one of the indices

        i=random.randint(0,len(domain)-1)

        # Choose a direction to change it

        dir=random.randint(-step,step)

        # Create a new list with one of the values changed

        vecb=vec[:]

        vecb[i]+=dir

        if vecb[i]<domain[i][0]: vecb[i]=domain[i][0]

        elif vecb[i]>domain[i][1]: vecb[i]=domain[i][1]

 

        # Calculate the current cost and the new cost

        ea=costf(vec)

        eb=costf(vecb)

        p=pow(math.e,(-eb-ea)/T)

        # Is it better, or does it make the probability

        # cutoff?

        if (eb<ea or random.random( )<p):

            vec=vecb

 

        # Decrease the temperature

        T=T*cool

    return vec

 

def crosscount(v):

    # Convert the number list into a dictionary of person:(x,y)

    loc=dict([(vertex[i],(v[i*2],v[i*2+1])) for i in range(0,len(vertex))])

    total=0

 

    # Loop through every pair of links

    for i in range(len(links)):

      for j in range(i+1,len(links)):

 

        # Get the locations

        (x1,y1),(x2,y2)=loc[links[i][0]],loc[links[i][1]]

        (x3,y3),(x4,y4)=loc[links[j][0]],loc[links[j][1]]

       

        den=(y4-y3)*(x2-x1)-(x4-x3)*(y2-y1)

       

        # den==0 if the lines are parallel

        if den==0: continue

 

        # Otherwise ua and ub are the fraction of the

        # line where they cross

        ua=((x4-x3)*(y1-y3)-(y4-y3)*(x1-x3))/den

        ub=((x2-x1)*(y1-y3)-(y2-y1)*(x1-x3))/den

       

        # If the fraction is between 0 and 1 for both lines

        # then they cross each other

        if ua>0 and ua<1 and ub>0 and ub<1:

            total+=1

 

    for i in range(len(vertex)):

        for j in range(i+1,len(vertex)):

          # Get the locations of the two nodes

          (x1,y1),(x2,y2)=loc[vertex[i]],loc[vertex[j]]

 

          # Find the distance between them

          dist=math.sqrt(math.pow(x1-x2,2)+math.pow(y1-y2,2))

          # Penalize any nodes closer than 50 pixels

          if dist<50:

            total+=(1.0-(dist/50.0))

    return total

                       

def drawnetwork(loc):

    #create the image

    img = Image.new('RGB', (400,400),(255,255,255))

    draw=ImageDraw.Draw(img)

    #create the position dict

    pos=dict([(vertex[i],(loc[i*2],loc[i*2+1])) for i in range(0, len(vertex))])

    #Draw Links

    for (a,b) in links:

        draw.line((pos[a],pos[b]), fill=(255,0,0))

    #Draw vertex

    for (n,p) in pos.items():

        draw.text(p,n,(0,0,0))

    img.save('graph.jpg', 'JPEG')

    img.show()

 

sol=randomoptimize(domain,crosscount)

crosscount(sol)

sol=annealingoptimize(domain,crosscount,step=50,cool=0.99)

crosscount(sol)

drawnetwork(sol)